HumansPreprint

Vaginal estrogen links to premenopausal-like bladder microbes

In women, at least six weeks of vaginal estrogen was associated with higher urinary lactobacilli and fewer pathogens, partially mirroring the premenopausal urinary microenvironment.

bioRxiv

In an observational study released as a preprint, researchers examined the urinary bladder microenvironments of premenopausal women, postmenopausal women, and postmenopausal women using vaginal estrogen. The team used sequencing and metabolomic data to assess shifts across menopause. While urinary microbiomes differed between premenopausal and postmenopausal women, at least six weeks of vaginal estrogen was associated with higher urinary lactobacilli and fewer opportunistic pathogens. This profile more closely approximated the premenopausal state. Changes in urinary Lactobacillus species correlated with vaginal pH, and matching species were typically identified across both vaginal and bladder microbiomes. Urinary metabolites also differed between the three groups, although most distinguishing metabolites remain unannotated. Among shared metabolites, Lactobacillus iners showed consistently inverse relationships compared to Lactobacillus crispatus, Lactobacillus gasseri, or Lactobacillus jensenii.

Why it matters

Menopause alters the female urogenital microenvironment, which correlates with an increased prevalence of common urinary conditions during reproductive aging. These findings demonstrate that local hormonal interventions associate with the preservation or recovery of premenopausal-like microbial patterns.

Caveats

This work is a preprint that has not yet been peer-reviewed. Because it is an observational study, it demonstrates associations rather than direct causation, and the majority of metabolites driving the group differences remain unannotated.

The paper

The Urogenital Lactobacillus Axis Across Menopause: Connections Between the Vagina, Bladder, and Urinary Metabolome

Duke University · Oregon Health & Science University

bioRxiv · 22 Sep 2026 · Preprint, not peer-reviewed

doi.org/10.64898/2026.09.18.751586PubMed 42818157