Vaginal estrogen is linked to premenopausal-like urinary microbes
In a preprint comparing women across menopausal stages, at least six weeks of vaginal estrogen tracked with more lactobacilli and fewer opportunistic pathogens.
bioRxiv
In women across menopausal stages, vaginal estrogen therapy is linked to a urinary microbiome that more closely resembles premenopausal profiles, according to a preprint on bioRxiv. Researchers analyzed sequencing and metabolomic data to compare urinary bladder microenvironments among premenopausal women, postmenopausal women, and postmenopausal women using vaginal estrogen. The urinary microbiome differed between pre- and postmenopausal participants. However, at least six weeks of vaginal estrogen was associated with higher levels of urinary lactobacilli and fewer opportunistic pathogens in postmenopausal women. Changes in urinary Lactobacillus species correlated with vaginal pH, and species found in the vagina tended to match those in the bladder. Urinary metabolites also differed across groups, with Lactobacillus iners showing consistently inverse relationships compared to Lactobacillus crispatus, Lactobacillus gasseri, or Lactobacillus jensenii.
Why it matters
The findings suggest that hormonal shifts during reproductive aging alter the urogenital microenvironment, while local estrogen may help maintain bacterial communities linked to urinary health.
Caveats
The findings come from an observational preprint, and the majority of urinary metabolites driving the differences between the study groups remain unannotated.
The paper
Duke University · Oregon Health & Science University
bioRxiv · 22 Sep 2026 · Preprint, not peer-reviewed
