AgingResearch.News
Aging clocksIn silicoPeer-reviewed

Mammalian cellular identity erodes with age through predictable chromatin drift

Imperfect maintenance of developmental chromatin constraints causes age-associated DNA methylation gains predominantly at polycomb-regulated genomic regions across mammalian tissues.

Nature · Yücel AD et al. · Paper published 30 Sep 2026

Paper

In mammalian cells, development establishes a regulatory chromatin grammar that progressively erodes during aging, driving the loss of cellular identity. Researchers developed a framework extending Waddington's epigenetic landscape to explain this decanalization process. During development, globally coordinated chromatin programs establish identity constraints across multiple timescales. Adult tissues subsequently rely on local mechanisms that maintain these constraints with imperfect fidelity, producing predictable drift over biological time. Antagonistic chromatin pathways, specifically polycomb repressive complex 2 (PRC2) repression balanced by H3K4/36 methylation and RNA polymerase II binding, enforce identity boundaries. With age, this balance deteriorates. In somatic mitotic tissues, the vast majority of age-associated DNA methylation gains concentrate at PRC2-bound low-methylated regions, marking these sites as conserved coordinates of slow epigenetic drift.

Why it matters

This model explains cross-tissue aging signatures, developmental timing correlations with lifespan, and the broad robustness of pan-mammalian epigenetic aging clocks. It highlights how stabilizing chromatin architecture could potentially preserve cellular identity and function over time.

Caveats

The findings represent a theoretical and computational framework rather than direct experimental interventions. Functional validation is required to test whether manipulating these specific chromatin boundaries can preserve cell identity in living organisms.

Written from the paper’s abstract, and every claim checked against it before publishing. Read the paper for the full methods and data.

The paper

Written in development and lost in ageing: the grammar of cellular identity

Yücel AD, Molière A, Gladyshev VN

Nature · 30 Sep 2026 · Peer-reviewed

Relevance
Core geroscience
News value
Notable
Evidence
In silico
Status
Peer-reviewed
See all